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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
982
total RNA-seq
530
ChIP-seq
182
ATAC-seq
169
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
15
Hi-C
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1167
Transcription
530
DNA binding
205
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
316
histone modification
315
histone
216
narrow histone mark
187
control
99
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
262
August, 2017
195
October, 2019
193
May, 2020
120
July, 2018
101
August, 2021
95
February, 2023
75
July, 2019
66
May, 2022
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
29
October, 2018
25
February, 2020
25
November, 2017
22
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
1
May, 2023
Available data
1889
bam
1754
bigWig
1076
tsv
902
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
195
bed broadPeak
187
bed bed3+
158
bigBed broadPeak
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2071
Homo sapiens
Biosample type
2074
tissue
979
primary cell
377
in vitro differentiated cells
307
cell line
10
stem cell
Organ
537
connective tissue
478
adipose tissue
443
pancreas
312
liver
225
heart
158
bone element
149
brain
71
blood vessel
71
vasculature
70
kidney
53
eye
48
artery
44
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1977
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1261
hg19
1229
GRCh38
Lab
1864
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
23
missing controlled_by
files.file_type!
bigBed narrowPeak
lab.title!
Katalin Susztak, Upenn
organ_slims!
ureter
BIOSAMPLE
ASSAY
2074 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
71
68
6
4
7
3
1
4
adipose tissue
382
1
2
3
1
liver
167
107
20
1
3
1
1
1
1
bone element
84
kidney
9
53
1
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