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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1005
total RNA-seq
514
ChIP-seq
219
ATAC-seq
179
single cell RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1200
Transcription
514
DNA binding
247
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
315
histone modification
314
histone
215
narrow histone mark
173
control
99
broad histone mark
28
transcription factor
7
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
262
August, 2017
229
August, 2021
195
October, 2019
193
May, 2020
120
July, 2018
95
February, 2023
75
July, 2019
May, 2022
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
29
October, 2018
25
February, 2020
25
November, 2017
22
May, 2019
19
April, 2020
17
October, 2017
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1804
bam
1687
bigWig
1076
tsv
881
bed narrowPeak
bigBed narrowPeak
353
fastq
238
tagAlign
213
bed broadPeak
204
bed bed3+
176
bigBed broadPeak
150
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2131
Homo sapiens
Biosample type
2134
tissue
845
primary cell
377
in vitro differentiated cells
307
cell line
10
stem cell
Organ
537
connective tissue
478
adipose tissue
419
pancreas
272
liver
214
heart
207
kidney
158
bone element
149
brain
71
blood vessel
71
vasculature
53
eye
48
artery
42
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2037
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1304
GRCh38
1222
hg19
Lab
1846
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
8
audit script error
Audit category:
23
missing controlled_by
files.file_type!
bigBed narrowPeak
month_released!
April, 2019
May, 2022
month_released!!
April, 2019
BIOSAMPLE
ASSAY
2134 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
286
71
50
6
7
4
3
1
4
adipose tissue
382
1
2
3
1
liver
147
107
1
3
1
1
1
1
kidney
49
4
75
64
6
1
1
bone element
84
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