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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
514
total RNA-seq
463
ChIP-seq
253
ATAC-seq
180
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
23
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
708
Transcription
463
DNA binding
282
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
285
histone modification
284
histone
205
narrow histone mark
163
control
79
broad histone mark
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
228
August, 2021
207
August, 2017
195
October, 2019
193
May, 2020
159
February, 2021
July, 2018
94
February, 2023
66
May, 2022
65
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
38
March, 2020
25
November, 2017
23
February, 2020
22
May, 2019
19
April, 2020
16
April, 2019
16
October, 2017
14
May, 2023
12
December, 2017
11
October, 2018
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
1
January, 2019
Available data
1351
bam
1233
bigWig
971
bed narrowPeak
560
tsv
bigBed narrowPeak
332
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1615
Homo sapiens
Biosample type
1617
tissue
929
primary cell
376
in vitro differentiated cells
307
cell line
10
stem cell
Organ
537
connective tissue
adipose tissue
323
pancreas
312
liver
225
heart
212
kidney
158
bone element
149
brain
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
1520
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
775
GRCh38
732
hg19
Lab
1265
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
9
audit script error
Audit category:
11
missing controlled_by
files.file_type!
bigBed narrowPeak
month_released!
July, 2018
organ_slims!
adipose tissue
urinary bladder
BIOSAMPLE
ASSAY
1617 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
172
71
68
6
7
4
3
1
4
liver
167
107
20
1
1
3
1
1
1
kidney
49
9
75
64
6
1
1
bone element
84
bone tissue
58
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