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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
999
total RNA-seq
521
ChIP-seq
243
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
15
WGBS
12
Hi-C
5
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1179
Transcription
521
DNA binding
272
DNA accessibility
20
DNA methylation
12
3D chromatin structure
Target of assay
310
histone modification
309
histone
215
narrow histone mark
184
control
94
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
262
August, 2017
229
August, 2021
195
October, 2019
193
May, 2020
120
July, 2018
95
February, 2023
July, 2019
66
May, 2022
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
29
October, 2018
25
November, 2017
24
February, 2020
22
May, 2019
19
April, 2020
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1828
bam
1695
bigWig
1028
tsv
965
bed narrowPeak
bigBed narrowPeak
360
fastq
224
tagAlign
209
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2120
Homo sapiens
Biosample type
2123
tissue
948
primary cell
377
in vitro differentiated cells
307
cell line
10
stem cell
Organ
526
connective tissue
467
adipose tissue
432
pancreas
304
liver
209
kidney
205
heart
158
bone element
129
brain
64
blood vessel
64
vasculature
53
eye
47
artery
37
musculature of body
33
limb
20
lung
17
nerve
16
skeleton
15
epithelium
11
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
2026
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1235
GRCh38
1197
hg19
Lab
1772
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
files.file_type!
bigBed narrowPeak
month_released!
July, 2019
October, 2017
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
2123 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
71
67
6
7
4
3
4
adipose tissue
382
1
2
1
3
liver
165
107
20
1
1
3
1
1
kidney
49
9
75
64
6
1
bone element
84
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