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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1019
total RNA-seq
491
ChIP-seq
218
ATAC-seq
173
single cell RNA-seq
87
RNA microarray
27
snATAC-seq
24
WGBS
23
pCHi-C
15
small RNA-seq
9
Hi-C
7
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1207
Transcription
491
DNA binding
246
DNA accessibility
31
DNA methylation
9
3D chromatin structure
Target of assay
297
histone modification
296
histone
209
narrow histone mark
167
control
87
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
236
August, 2017
223
August, 2021
193
May, 2020
189
October, 2019
120
July, 2018
64
May, 2022
61
July, 2019
60
February, 2023
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
32
March, 2020
29
October, 2018
25
November, 2017
20
February, 2020
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
10
May, 2019
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
1
January, 2019
Available data
1776
bam
1645
bigWig
1055
tsv
833
bed narrowPeak
bigBed narrowPeak
375
fastq
223
tagAlign
167
bed bed3+
163
bed broadPeak
156
txt
139
bigBed broadPeak
64
xls
21
bed bedMethyl
21
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2098
Homo sapiens
Biosample type
2101
tissue
959
primary cell
377
in vitro differentiated cells
239
cell line
8
stem cell
Organ
537
connective tissue
478
adipose tissue
443
pancreas
312
liver
225
heart
212
kidney
158
bone element
149
brain
blood vessel
71
vasculature
53
eye
48
artery
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2004
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1256
GRCh38
1231
hg19
Lab
1749
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
8
audit script error
Audit category:
23
missing controlled_by
files.file_type!
bigBed narrowPeak
month_released!
March, 2023
organ_slims!
blood vessel
musculature of body
BIOSAMPLE
ASSAY
2101 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
71
68
6
7
4
3
1
4
adipose tissue
382
1
2
3
1
liver
167
107
20
1
3
1
1
1
1
kidney
49
9
75
64
6
1
1
bone element
84
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