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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
748
total RNA-seq
195
ATAC-seq
180
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
24
pCHi-C
23
WGBS
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
1
DNase-seq
Assay category
936
Transcription
213
DNA accessibility
180
DNA binding
32
DNA methylation
12
3D chromatin structure
Target of assay
histone modification
285
histone
200
narrow histone mark
158
control
85
broad histone mark
22
transcription factor
6
RNA binding protein
Date released
545
February, 2021
227
August, 2021
166
May, 2020
77
February, 2023
69
July, 2019
66
October, 2019
51
August, 2017
47
September, 2023
42
May, 2022
31
March, 2020
24
February, 2020
21
May, 2019
19
April, 2020
18
October, 2018
15
April, 2019
15
May, 2023
12
December, 2017
12
November, 2017
6
October, 2017
5
May, 2024
5
November, 2018
4
December, 2018
3
December, 2019
3
May, 2021
2
January, 2018
1
January, 2019
1
November, 2019
Available data
1071
bam
942
bigWig
801
tsv
403
bed narrowPeak
bigBed narrowPeak
178
bed bed3+
170
bed broadPeak
170
bigBed broadPeak
151
txt
132
fastq
64
xls
50
tagAlign
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
Organism
1485
Homo sapiens
Biosample type
1487
tissue
522
primary cell
275
in vitro differentiated cells
215
cell line
6
stem cell
Organ
505
connective tissue
447
adipose tissue
pancreas
252
liver
210
kidney
184
heart
158
bone element
71
blood vessel
71
vasculature
53
brain
51
eye
48
artery
37
limb
25
musculature of body
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1420
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
811
GRCh38
753
hg19
Lab
1233
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
1
Kyle Gaulton, UCSD
Audit category:
88
inconsistent ontology term
8
audit script error
Audit category:
12
missing controlled_by
files.file_type!
bigBed narrowPeak
month_released!
March, 2023
organ_slims!
pancreas
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
1487 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
DNase-seq
tissue
adipose tissue
382
2
1
1
3
liver
167
20
47
1
1
3
1
1
1
kidney
49
75
7
64
6
1
1
bone element
84
bone tissue
58
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