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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
345
ChIP-seq
257
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
3
snDrop-seq
2
MeRIP-seq
1
DNase-seq
Assay category
1227
Transcription
345
DNA binding
286
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
316
histone modification
315
histone
216
narrow histone mark
control
99
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
233
August, 2017
229
August, 2021
170
May, 2020
168
October, 2019
120
July, 2018
95
February, 2023
75
July, 2019
66
May, 2022
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
April, 2020
15
May, 2023
14
October, 2017
13
November, 2017
8
January, 2021
6
April, 2018
6
November, 2018
5
March, 2019
3
December, 2019
2
April, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1772
bigWig
1740
bam
1076
tsv
984
bed narrowPeak
bigBed narrowPeak
310
fastq
213
bed broadPeak
202
bed bed3+
186
tagAlign
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2027
Homo sapiens
Biosample type
2029
tissue
943
primary cell
340
in vitro differentiated cells
222
cell line
7
stem cell
Organ
513
connective tissue
454
adipose tissue
414
pancreas
266
liver
209
heart
206
kidney
158
bone element
124
brain
55
blood vessel
55
vasculature
53
eye
41
artery
40
musculature of body
21
limb
20
lung
16
skeleton
15
epithelium
6
nerve
5
gonad
5
ovary
4
spleen
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1932
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1301
GRCh38
1259
hg19
Lab
1679
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
23
missing controlled_by
files.file_type!
bigBed narrowPeak
month_released!
March, 2023
target.investigated_as!
control
BIOSAMPLE
ASSAY
2029 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
snDrop-seq
MeRIP-seq
DNase-seq
tissue
islet of Langerhans
292
58
68
6
7
4
3
1
2
adipose tissue
382
2
3
1
liver
167
64
20
1
3
1
1
1
1
kidney
49
3
75
64
6
1
1
bone element
84
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