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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
110
ChIP-seq
4
WGBS
3
small RNA-seq
1
DNase-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
154
Transcription
110
DNA binding
5
DNA methylation
1
3D chromatin structure
1
DNA accessibility
Target of assay
60
histone modification
59
histone
46
control
41
narrow histone mark
18
broad histone mark
4
transcription factor
Date released
193
May, 2020
48
August, 2017
May, 2022
12
December, 2017
8
July, 2019
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
288
bam
245
bigWig
154
tsv
93
bed narrowPeak
83
fastq
70
tagAlign
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
272
Homo sapiens
Biosample type
272
tissue
108
cell line
12
primary cell
1
in vitro differentiated cells
Organ
537
connective tissue
478
adipose tissue
419
pancreas
272
liver
225
heart
212
kidney
158
bone element
149
brain
71
blood vessel
71
vasculature
53
eye
48
artery
42
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
272
AMP
Genome assembly (visualization)
199
hg19
189
GRCh38
Lab
272
AMP-T2D consortium
files.file_type!
bigBed narrowPeak
month_released!
May, 2022
organ_slims!
stomach
BIOSAMPLE
ASSAY
272 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
DNase-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
147
107
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
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