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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
634
total RNA-seq
253
ATAC-seq
180
single cell RNA-seq
178
ChIP-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
828
Transcription
282
DNA accessibility
178
DNA binding
32
DNA methylation
16
3D chromatin structure
Target of assay
histone modification
284
histone
205
narrow histone mark
163
control
79
broad histone mark
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
228
August, 2021
166
May, 2020
159
February, 2021
132
August, 2017
120
July, 2018
94
February, 2023
69
October, 2019
66
May, 2022
65
July, 2019
47
September, 2023
40
May, 2021
39
November, 2019
37
March, 2020
23
February, 2020
22
May, 2019
19
April, 2020
15
April, 2019
14
May, 2023
12
December, 2017
12
November, 2017
11
October, 2018
10
October, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
December, 2018
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
1
January, 2019
Available data
1002
bam
829
bigWig
677
tsv
453
bed narrowPeak
261
fastq
bigBed narrowPeak
187
bed bed3+
176
bed broadPeak
174
bigBed broadPeak
157
txt
64
xls
51
tagAlign
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1451
Homo sapiens
Biosample type
1453
tissue
779
primary cell
282
cell line
276
in vitro differentiated cells
8
stem cell
Organ
505
connective tissue
adipose tissue
413
pancreas
252
liver
210
kidney
184
heart
158
bone element
71
blood vessel
71
vasculature
53
brain
51
eye
48
artery
37
limb
25
musculature of body
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1358
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
708
GRCh38
671
hg19
Lab
1136
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
6
missing controlled_by
files.file_type!
bigBed narrowPeak
organ_slims!
adipose tissue
blood
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
1453 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
68
6
20
7
4
3
1
4
liver
167
20
1
47
1
3
1
1
1
kidney
49
75
64
7
6
1
1
bone element
84
bone tissue
58
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