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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
431
ChIP-seq
257
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
10
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1227
Transcription
431
DNA binding
286
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
316
histone modification
315
histone
216
narrow histone mark
187
control
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
201
August, 2017
193
May, 2020
186
October, 2019
120
July, 2018
95
February, 2023
74
July, 2019
66
May, 2022
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
29
October, 2018
25
February, 2020
22
May, 2019
21
November, 2017
20
May, 2024
19
April, 2020
16
April, 2019
15
May, 2023
12
December, 2017
12
October, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1685
bam
1519
bigWig
1076
tsv
731
bed narrowPeak
bigBed narrowPeak
332
fastq
199
bed bed3+
193
bed broadPeak
176
bigBed broadPeak
162
tagAlign
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2113
Homo sapiens
Biosample type
2116
tissue
877
primary cell
328
in vitro differentiated cells
298
cell line
9
stem cell
Organ
517
connective tissue
458
adipose tissue
429
pancreas
294
liver
212
kidney
202
heart
158
bone element
137
brain
71
blood vessel
71
vasculature
53
eye
48
artery
38
limb
32
musculature of body
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2019
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1266
GRCh38
1231
hg19
Lab
1784
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
21
missing controlled_by
files.file_type!
bigBed narrowPeak
organ_slims!
pericardium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
2116 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
57
68
6
7
4
3
1
4
adipose tissue
382
1
2
3
1
liver
167
89
20
1
3
1
1
1
1
kidney
49
9
75
64
6
1
1
bone element
84
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