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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
pCHi-C
1
RRBS
Assay category
121
DNA binding
21
Transcription
4
DNA accessibility
1
DNA methylation
Target of assay
96
histone
96
histone modification
84
narrow histone mark
25
control
12
broad histone mark
Date released
86
October, 2019
25
November, 2017
12
February, 2020
10
July, 2019
10
October, 2017
3
March, 2020
3
May, 2019
1
February, 2023
Available data
226
bam
202
bigWig
192
bed narrowPeak
118
tagAlign
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
24
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
150
Homo sapiens
Biosample type
150
tissue
10
primary cell
Organ
537
connective tissue
478
adipose tissue
443
pancreas
312
liver
225
heart
212
kidney
158
bone element
149
brain
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
150
AMP
Genome assembly (visualization)
89
hg19
88
GRCh38
Lab
150
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigBed narrowPeak
organ_slims!
blood
BIOSAMPLE
ASSAY
150 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
RRBS
tissue
brain
14
1
1
1
cingulate gyrus
8
layer of hippocampus
7
cerebellum (Hemisphere)
3
1
1
1
substantia nigra
5
1
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