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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
205
ATAC-seq
174
single cell RNA-seq
109
total RNA-seq
86
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
292
DNA binding
283
Transcription
234
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
187
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
229
August, 2021
106
August, 2017
101
February, 2021
82
October, 2019
81
February, 2023
47
September, 2023
46
May, 2022
29
March, 2020
29
October, 2018
February, 2020
25
November, 2017
23
May, 2020
22
May, 2019
21
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
14
July, 2019
12
December, 2017
9
October, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
November, 2018
2
December, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
1907
bam
bigWig
1048
tsv
972
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
962
Homo sapiens
Biosample type
965
tissue
300
primary cell
131
in vitro differentiated cells
111
cell line
7
stem cell
Organ
208
kidney
153
heart
131
pancreas
100
bone element
95
liver
64
connective tissue
63
adipose tissue
60
blood vessel
60
vasculature
52
eye
51
brain
44
artery
28
limb
23
musculature of body
20
lung
16
skeleton
epithelium
11
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
870
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
147
GRCh38
96
hg19
Lab
674
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
month_released!
February, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
965 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
75
64
49
6
1
1
islet of Langerhans
42
65
32
7
4
3
1
4
liver
63
1
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
35
3
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