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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
single cell RNA-seq
159
ChIP-seq
138
ATAC-seq
123
total RNA-seq
87
RNA microarray
26
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
296
Transcription
165
DNA accessibility
159
DNA binding
22
DNA methylation
16
3D chromatin structure
Target of assay
135
control
64
histone
64
histone modification
narrow histone mark
25
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
229
August, 2021
101
February, 2021
February, 2023
59
August, 2017
50
October, 2019
47
September, 2023
46
May, 2022
29
March, 2020
29
October, 2018
25
February, 2020
22
May, 2019
21
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
14
July, 2019
12
December, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
December, 2019
3
November, 2018
2
May, 2021
2
November, 2017
1
August, 2022
1
January, 2019
1
October, 2017
Available data
1664
bam
bigWig
1072
tsv
655
bed narrowPeak
453
bigBed narrowPeak
349
fastq
199
bed bed3+
198
bed broadPeak
176
bigBed broadPeak
153
txt
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
775
Homo sapiens
Biosample type
777
tissue
383
primary cell
131
cell line
89
in vitro differentiated cells
7
stem cell
Organ
208
kidney
120
heart
108
pancreas
92
bone element
51
liver
49
adipose tissue
49
connective tissue
30
limb
28
blood vessel
28
vasculature
22
brain
21
musculature of body
20
eye
20
lung
12
nerve
11
artery
9
spleen
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
700
AMP
47
KPMP
19
LungMap
11
T1D
Genome assembly (visualization)
109
GRCh38
73
hg19
Lab
504
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
files.file_type!
bigWig
tagAlign
month_released!
February, 2023
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
777 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
64
7
75
49
6
1
1
islet of Langerhans
16
54
27
5
4
3
1
4
bone element
84
liver
1
18
20
1
1
1
3
heart left ventricle
18
6
1
1
1
2
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