Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
288
ChIP-seq
216
ATAC-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
16
Hi-C
11
RRBS
11
WGBS
5
pCHi-C
4
MeRIP-seq
1
DNase-seq
Assay category
288
DNA binding
245
DNA accessibility
177
Transcription
22
DNA methylation
16
3D chromatin structure
Target of assay
187
control
102
histone
102
histone modification
52
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
130
August, 2021
106
August, 2017
93
February, 2021
91
February, 2023
77
October, 2019
47
September, 2023
46
May, 2022
29
October, 2018
25
November, 2017
23
May, 2020
22
May, 2019
21
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
14
July, 2019
12
December, 2017
9
March, 2020
9
October, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
November, 2018
2
May, 2021
1
August, 2022
1
December, 2019
1
January, 2019
Available data
1907
bam
bigWig
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
839
Homo sapiens
Biosample type
842
tissue
457
primary cell
131
in vitro differentiated cells
126
cell line
3
stem cell
Organ
198
kidney
129
pancreas
100
bone element
94
liver
63
connective tissue
62
adipose tissue
58
heart
53
blood vessel
53
vasculature
49
brain
48
eye
42
artery
28
limb
22
musculature of body
19
lung
16
skeleton
12
epithelium
11
nerve
8
spleen
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
skin of body
1
thymus
Project
747
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
147
GRCh38
108
hg19
Lab
552
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
85
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
tsv
organ_slims!
gonad
skin of body
BIOSAMPLE
ASSAY
842 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
Hi-C
RRBS
WGBS
pCHi-C
MeRIP-seq
DNase-seq
tissue
kidney
7
75
49
59
6
1
1
islet of Langerhans
38
64
31
7
3
1
4
4
liver
63
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
35
3
+ See 61 more…
See all biosamples
Download