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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
260
ChIP-seq
163
single cell RNA-seq
142
ATAC-seq
87
RNA microarray
87
total RNA-seq
25
pCHi-C
22
snATAC-seq
15
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
260
DNA binding
250
Transcription
165
DNA accessibility
22
DNA methylation
15
3D chromatin structure
Target of assay
161
control
100
histone
100
histone modification
55
narrow histone mark
45
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
106
August, 2017
101
August, 2021
101
February, 2021
95
February, 2023
82
October, 2019
47
September, 2023
46
May, 2022
29
March, 2020
29
October, 2018
25
February, 2020
25
November, 2017
May, 2020
22
May, 2019
21
November, 2019
19
April, 2020
15
April, 2019
14
July, 2019
12
December, 2017
October, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
December, 2019
3
November, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
May, 2023
Available data
1699
bam
bigWig
933
tsv
881
bed narrowPeak
555
bigBed narrowPeak
360
fastq
209
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
174
tagAlign
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
828
Homo sapiens
Biosample type
831
tissue
418
primary cell
139
cell line
135
in vitro differentiated cells
7
stem cell
Organ
156
heart
132
pancreas
100
bone element
73
liver
66
connective tissue
66
kidney
65
adipose tissue
63
blood vessel
63
vasculature
54
brain
53
eye
46
artery
31
limb
25
musculature of body
20
lung
16
skeleton
15
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
736
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
107
hg19
72
GRCh38
Lab
682
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
files.file_type!
bigWig
lab.title!
Katalin Susztak, Upenn
month_released!
May, 2020
October, 2017
BIOSAMPLE
ASSAY
831 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
RNA microarray
total RNA-seq
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
42
65
32
4
7
3
1
4
bone element
84
liver
40
1
20
1
1
1
3
kidney
7
53
1
coronary artery
2
35
1
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