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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
153
ATAC-seq
86
RNA microarray
85
total RNA-seq
68
single cell RNA-seq
25
pCHi-C
22
snATAC-seq
14
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
292
DNA binding
176
DNA accessibility
153
Transcription
22
DNA methylation
14
3D chromatin structure
Target of assay
187
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
August, 2021
106
August, 2017
101
February, 2021
95
February, 2023
82
October, 2019
47
September, 2023
46
May, 2022
29
March, 2020
29
October, 2018
25
November, 2017
24
February, 2020
23
May, 2020
22
May, 2019
21
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
14
July, 2019
12
December, 2017
9
October, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
December, 2019
3
November, 2018
2
May, 2021
1
August, 2022
1
January, 2019
Available data
1907
bam
bigWig
976
tsv
920
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
773
Homo sapiens
Biosample type
775
tissue
474
primary cell
118
cell line
114
in vitro differentiated cells
7
stem cell
Organ
130
pancreas
100
bone element
96
liver
80
kidney
65
connective tissue
64
adipose tissue
64
heart
63
brain
57
blood vessel
57
vasculature
53
eye
44
artery
31
limb
25
musculature of body
20
lung
16
skeleton
15
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
680
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
107
hg19
83
GRCh38
Lab
614
AMP-T2D consortium
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
month_released!
August, 2018
August, 2021
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
775 results
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Clear Filters
ChIP-seq
ATAC-seq
RNA microarray
total RNA-seq
single cell RNA-seq
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
42
65
31
4
7
2
1
4
liver
63
20
1
1
1
1
3
bone element
84
kidney
7
11
56
1
coronary artery
2
35
1
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