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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 292ChIP-seq
  • 217ATAC-seq
  • 174single cell RNA-seq
  • 136total RNA-seq
  • 87RNA microarray
  • 28snATAC-seq
  • 25pCHi-C
  • 16Hi-C
  • 11RRBS
  • 11WGBS
  • 4MeRIP-seq
  • 3snDrop-seq
  • 1DNase-seq
Assay category
  • 310Transcription
  • 292DNA binding
  • 246DNA accessibility
  • 22DNA methylation
  • 163D chromatin structure
Target of assay
  • 187control
  • 106histone
  • 106histone modification
  • 56narrow histone mark
  • 50broad histone mark
  • 2nucleotide modification
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 229August, 2021
  • 106August, 2017
  • 101February, 2021
  • 95February, 2023
  • 82October, 2019
  • 47September, 2023
  • 46May, 2022
  • 29March, 2020
  • 29October, 2018
  • 25February, 2020
  • 25November, 2017
  • 23May, 2020
  • 22May, 2019
  • 21November, 2019
  • 19April, 2020
  • 15April, 2019
  • 15May, 2023
  • 14July, 2019
  • 12December, 2017
  • 9October, 2017
  • 8January, 2021
  • 6September, 2017
  • 5March, 2019
  • 4December, 2018
  • 4July, 2018
  • 4November, 2020
  • 3December, 2019
  • 3November, 2018
  • 2May, 2021
  • 1August, 2022
  • 1January, 2019
Available data
  • 1907bam
  • bigWig
  • 1076tsv
  • 984bed narrowPeak
  • 561bigBed narrowPeak
  • 377fastq
  • 238tagAlign
  • 213bed broadPeak
  • 205bed bed3+
  • 176bigBed broadPeak
  • 157txt
  • 64xls
  • 25bed bedMethyl
  • 25bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1002Homo sapiens
Biosample type
  • 1005tissue
  • 475primary cell
  • 140cell line
  • 135in vitro differentiated cells
  • 7stem cell
Organ
  • 208kidney
  • 156heart
  • 132pancreas
  • 100bone element
  • 96liver
  • 66connective tissue
  • 65adipose tissue
  • 63blood vessel
  • 63brain
  • 63vasculature
  • 53eye
  • 46artery
  • 31limb
  • 25musculature of body
  • 20lung
  • 16skeleton
  • 15epithelium
  • 12nerve
  • 9spleen
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 910AMP
  • 47KPMP
  • 29T1D
  • 19LungMap
Genome assembly (visualization)
  • 147GRCh38
  • 108hg19
Lab
  • 714AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 52Kyle Gaulton, UCSD
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 88inconsistent ontology term
  • 9audit script error
Audit category:
  • 1missing controlled_by
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

1005 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney7756449611
islet of Langerhans42653274314
liver631201113
bone element84
coronary artery2351
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