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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
ChIP-seq
120
total RNA-seq
21
WGBS
16
small RNA-seq
11
RRBS
8
ATAC-seq
4
Hi-C
3
FAIRE-seq
2
DNase-seq
Assay category
176
DNA binding
136
Transcription
32
DNA methylation
13
DNA accessibility
4
3D chromatin structure
Target of assay
124
histone modification
123
histone
73
broad histone mark
50
narrow histone mark
29
control
23
transcription factor
2
RNA binding protein
Date released
539
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
241
bigWig
234
bam
175
fastq
136
tsv
73
bed narrowPeak
59
tagAlign
26
bed bed3+
26
bed broadPeak
24
bigBed narrowPeak
19
bed bedMethyl
19
bigBed bedMethyl
Organism
354
Homo sapiens
Biosample type
361
tissue
90
primary cell
68
in vitro differentiated cells
Organ
153
pancreas
67
adipose tissue
67
connective tissue
62
liver
33
musculature of body
20
heart
11
brain
7
blood vessel
7
vasculature
5
limb
4
kidney
1
artery
1
pericardium
Project
361
AMP
Genome assembly (visualization)
240
hg19
219
GRCh38
Lab
361
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
csv
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
361 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
small RNA-seq
RRBS
ATAC-seq
Hi-C
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
42
89
1
1
1
liver
48
2
3
1
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
1
1
4
pancreas
14
1
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