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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
834
total RNA-seq
752
ChIP-seq
233
ATAC-seq
174
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
12
WGBS
11
Hi-C
4
MeRIP-seq
4
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
1008
Transcription
752
DNA binding
437
DNA accessibility
16
DNA methylation
11
3D chromatin structure
Target of assay
558
histone
558
histone modification
280
narrow histone mark
278
broad histone mark
141
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
539
February, 2021
236
October, 2019
230
August, 2017
229
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
26
May, 2022
24
February, 2020
23
October, 2017
19
April, 2020
19
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1562
bam
1451
bigWig
882
tsv
864
bed narrowPeak
510
bigBed narrowPeak
294
fastq
210
bed broadPeak
199
bed bed3+
173
bigBed broadPeak
168
tagAlign
157
txt
64
xls
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
csv
1
bedpe
1
tagAlign bed3+
Organism
2333
Homo sapiens
Biosample type
2342
tissue
1043
primary cell
379
in vitro differentiated cells
261
cell line
10
stem cell
Organ
537
connective tissue
499
pancreas
478
adipose tissue
liver
293
heart
290
kidney
254
brain
158
bone element
126
blood vessel
126
vasculature
117
limb
75
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2245
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1567
GRCh38
1434
hg19
Lab
2030
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
csv
month_released!
July, 2019
organ_slims!
liver
pericardium
BIOSAMPLE
ASSAY
2342 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
MeRIP-seq
RRBS
snDrop-seq
FAIRE-seq
tissue
islet of Langerhans
292
71
68
1
6
7
4
3
4
1
adipose tissue
382
2
3
1
3
kidney
49
27
75
13
59
6
1
bone element
84
heart left ventricle
1
35
3
18
1
1
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