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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ATAC-seq
67
single cell RNA-seq
56
total RNA-seq
40
ChIP-seq
26
snATAC-seq
4
MeRIP-seq
1
Hi-C
1
pCHi-C
Assay category
123
Transcription
115
DNA accessibility
40
DNA binding
1
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
2
control
2
nucleotide modification
Date released
129
August, 2021
47
September, 2023
May, 2022
40
May, 2024
19
April, 2020
18
February, 2023
14
May, 2023
8
January, 2021
4
November, 2020
3
March, 2019
2
May, 2021
Available data
104
bed narrowPeak
64
xls
57
txt
41
bigWig
2
bed broadPeak
fastq
hic
1
bam
1
bedpe
1
bedpe bed3+
1
tsv
Organism
283
Homo sapiens
Biosample type
284
tissue
257
primary cell
54
in vitro differentiated cells
46
cell line
2
stem cell
Organ
188
kidney
40
heart
36
pancreas
19
lung
1
thymus
Project
191
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
117
GRCh38
2
hg19
Lab
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
files.file_type!
fastq
hic
lab.title!
AMP-T2D consortium
month_released!
May, 2022
BIOSAMPLE
ASSAY
284 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
pCHi-C
tissue
kidney
75
58
49
6
left cardiac atrium
40
islet of Langerhans
14
6
6
4
1
lung
9
10
pancreas
1
4
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