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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
650
ChIP-seq
410
total RNA-seq
167
DNase-seq
163
single cell RNA-seq
132
ATAC-seq
86
RNA microarray
24
pCHi-C
22
snATAC-seq
15
Hi-C
14
WGBS
14
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
650
DNA binding
587
Transcription
323
DNA accessibility
22
DNA methylation
15
3D chromatin structure
Target of assay
522
histone
522
histone modification
284
narrow histone mark
238
broad histone mark
115
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
240
October, 2019
193
May, 2020
162
June, 2019
118
July, 2018
115
May, 2019
101
February, 2021
100
August, 2021
94
February, 2023
82
November, 2017
80
April, 2019
70
August, 2017
67
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
23
February, 2020
19
April, 2020
16
October, 2018
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
May, 2022
1
August, 2022
1
January, 2018
Available data
1409
bam
1271
bigWig
887
bed narrowPeak
619
tsv
551
bigBed narrowPeak
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
100
txt
23
bed bedMethyl
23
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1713
Homo sapiens
Biosample type
1714
tissue
643
primary cell
235
cell line
211
in vitro differentiated cells
5
stem cell
Organ
connective tissue
445
adipose tissue
313
heart
292
pancreas
253
brain
238
liver
158
bone element
157
kidney
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
1617
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1047
GRCh38
979
hg19
Lab
1570
AMP-T2D consortium
Katalin Susztak, Upenn
47
KPMP
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
9
audit script error
files.file_type!
fastq
lab.title!
Karen Mohlke, UNC
Katalin Susztak, Upenn
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
1714 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
ATAC-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
WGBS
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
islet of Langerhans
42
195
48
4
7
3
1
4
liver
78
147
1
1
1
2
1
kidney
27
13
53
1
1
bone element
84
heart left ventricle
35
3
3
18
2
1
1
4
1
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