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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
50
total RNA-seq
6
snATAC-seq
4
ChIP-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
115
Transcription
4
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
2
control
2
histone
2
histone modification
2
narrow histone mark
Date released
128
August, 2021
68
June, 2019
47
September, 2023
April, 2019
14
May, 2023
8
February, 2021
4
July, 2019
4
October, 2019
3
December, 2019
Available data
135
bed narrowPeak
75
bam
73
bigWig
69
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
276
Homo sapiens
Biosample type
276
tissue
36
primary cell
19
cell line
Organ
504
connective tissue
445
adipose tissue
278
liver
276
kidney
265
pancreas
256
heart
253
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
229
AMP
47
KPMP
Genome assembly (visualization)
147
GRCh38
74
hg19
Lab
142
Katalin Susztak, Upenn
87
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
files.file_type!
fastq
lab.title!
Kyle Gaulton, UCSD
month_released!
April, 2019
BIOSAMPLE
ASSAY
276 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
13
64
49
6
4
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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