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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
858
total RNA-seq
529
ChIP-seq
168
DNase-seq
122
ATAC-seq
107
single cell RNA-seq
87
RNA microarray
24
pCHi-C
17
WGBS
16
small RNA-seq
13
Hi-C
8
RRBS
3
snDrop-seq
2
FAIRE-seq
2
snATAC-seq
Assay category
981
Transcription
529
DNA binding
294
DNA accessibility
25
DNA methylation
13
3D chromatin structure
Target of assay
519
histone
519
histone modification
281
narrow histone mark
238
broad histone mark
control
10
transcription factor
8
RNA binding protein
Date released
545
February, 2021
215
October, 2019
170
May, 2020
163
June, 2019
118
July, 2018
99
August, 2021
93
May, 2019
92
August, 2017
77
February, 2023
77
July, 2019
70
November, 2017
66
April, 2019
40
March, 2020
40
November, 2019
38
May, 2021
25
February, 2020
14
October, 2018
5
October, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
May, 2023
Available data
1715
bam
1711
bigWig
1075
tsv
842
bed narrowPeak
561
bigBed narrowPeak
fastq
211
bed broadPeak
202
bed bed3+
186
tagAlign
176
bigBed broadPeak
94
txt
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1955
Homo sapiens
Biosample type
1956
tissue
268
primary cell
189
in vitro differentiated cells
173
cell line
4
stem cell
Organ
499
connective tissue
440
adipose tissue
257
heart
246
pancreas
230
brain
212
liver
158
bone element
117
blood vessel
117
vasculature
105
limb
104
kidney
76
musculature of body
66
artery
56
eye
32
nerve
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
1952
AMP
4
T1D
Genome assembly (visualization)
1462
GRCh38
1437
hg19
Lab
1956
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
91
inconsistent ontology term
9
audit script error
files.file_type!
fastq
organ_slims!
mammary gland
target.investigated_as!
control
BIOSAMPLE
ASSAY
1956 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
189
37
34
4
1
1
1
liver
147
52
1
1
2
1
1
bone element
84
heart left ventricle
3
29
3
2
18
1
4
1
1
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