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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
585
ChIP-seq
530
total RNA-seq
219
ATAC-seq
174
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
14
small RNA-seq
13
WGBS
12
Hi-C
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
1
DNase-seq
Assay category
718
Transcription
585
DNA binding
250
DNA accessibility
21
DNA methylation
12
3D chromatin structure
Target of assay
474
histone
474
histone modification
270
narrow histone mark
204
broad histone mark
98
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
228
August, 2021
193
May, 2020
172
October, 2019
153
February, 2021
June, 2019
118
July, 2018
108
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
70
August, 2017
62
July, 2019
47
September, 2023
42
May, 2022
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
20
February, 2020
19
April, 2020
16
October, 2018
14
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1223
bam
1128
bigWig
749
bed narrowPeak
670
tsv
337
bigBed narrowPeak
fastq
230
tagAlign
157
txt
64
xls
44
bed broadPeak
33
bed bed3+
22
bed bedMethyl
22
bigBed bedMethyl
11
hic
10
bedpe bed3+
8
bigBed broadPeak
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1702
Homo sapiens
Biosample type
1703
tissue
622
primary cell
253
in vitro differentiated cells
235
cell line
6
stem cell
Organ
503
connective tissue
adipose tissue
288
pancreas
286
heart
278
liver
231
kidney
228
brain
158
bone element
130
blood vessel
130
vasculature
limb
71
artery
53
eye
48
musculature of body
43
nerve
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
1606
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
954
GRCh38
848
hg19
Lab
1377
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
89
inconsistent ontology term
9
audit script error
files.file_type!
fastq
month_released!
June, 2019
organ_slims!
adipose tissue
limb
BIOSAMPLE
ASSAY
1703 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
small RNA-seq
WGBS
Hi-C
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
42
195
48
7
4
3
1
4
liver
78
167
20
1
1
1
2
1
kidney
27
49
75
64
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
1
4
1
1
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