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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
934
total RNA-seq
231
ATAC-seq
174
single cell RNA-seq
168
DNase-seq
132
ChIP-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1124
Transcription
429
DNA accessibility
132
DNA binding
25
DNA methylation
16
3D chromatin structure
Target of assay
histone
549
histone modification
295
narrow histone mark
254
broad histone mark
119
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
166
May, 2020
163
June, 2019
118
July, 2018
95
February, 2023
77
July, 2019
74
October, 2019
47
September, 2023
42
May, 2022
40
May, 2021
40
November, 2019
38
March, 2020
26
May, 2019
25
August, 2017
25
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
8
January, 2021
5
May, 2024
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
October, 2018
1
August, 2022
October, 2017
Available data
1433
bam
1243
bigWig
1076
tsv
459
bed narrowPeak
fastq
249
bigBed narrowPeak
193
bed bed3+
177
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
50
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1843
Homo sapiens
Biosample type
1845
tissue
515
primary cell
206
cell line
206
in vitro differentiated cells
6
stem cell
Organ
472
connective tissue
414
adipose tissue
279
kidney
261
pancreas
226
liver
218
heart
158
bone element
79
blood vessel
79
vasculature
75
brain
73
limb
55
musculature of body
54
eye
53
artery
20
lung
19
nerve
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
1750
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1158
GRCh38
1096
hg19
Lab
1554
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
89
inconsistent ontology term
9
audit script error
files.file_type!
fastq
month_released!
October, 2017
target.investigated_as!
histone
recombinant protein
BIOSAMPLE
ASSAY
1845 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
ChIP-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
195
48
6
7
4
3
1
4
liver
167
20
1
26
1
2
1
1
kidney
49
75
64
13
7
6
1
1
1
bone element
84
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