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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
934
total RNA-seq
391
ChIP-seq
231
ATAC-seq
174
single cell RNA-seq
168
DNase-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1124
Transcription
429
DNA accessibility
391
DNA binding
25
DNA methylation
16
3D chromatin structure
Target of assay
554
histone
554
histone modification
narrow histone mark
258
broad histone mark
120
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
166
May, 2020
163
June, 2019
118
July, 2018
113
October, 2019
95
February, 2023
82
May, 2019
77
August, 2017
77
July, 2019
57
April, 2019
54
November, 2017
47
September, 2023
42
May, 2022
40
May, 2021
40
November, 2019
37
March, 2020
25
February, 2020
25
May, 2024
19
April, 2020
15
May, 2023
10
October, 2018
8
January, 2021
5
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1664
bam
1504
bigWig
1075
tsv
718
bed narrowPeak
453
bigBed narrowPeak
fastq
199
bed bed3+
198
bed broadPeak
176
bigBed broadPeak
157
txt
128
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2101
Homo sapiens
Biosample type
2103
tissue
604
primary cell
231
in vitro differentiated cells
224
cell line
6
stem cell
Organ
492
connective tissue
434
adipose tissue
289
kidney
277
pancreas
275
heart
241
liver
158
bone element
140
brain
115
blood vessel
115
vasculature
107
limb
71
musculature of body
67
artery
54
eye
35
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
stomach
1
urinary bladder
Project
2008
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1356
GRCh38
1250
hg19
Lab
1792
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
88
inconsistent ontology term
9
audit script error
files.file_type!
fastq
organ_slims!
stomach
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2103 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
195
14
48
7
4
3
1
4
liver
167
41
20
1
1
2
1
1
kidney
49
17
75
64
13
6
1
1
1
bone element
84
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