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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 934total RNA-seq
  • 687ChIP-seq
  • 231ATAC-seq
  • 174single cell RNA-seq
  • 168DNase-seq
  • 87RNA microarray
  • 28snATAC-seq
  • 25pCHi-C
  • 17WGBS
  • 16Hi-C
  • 16small RNA-seq
  • 8RRBS
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2FAIRE-seq
Assay category
  • 1124Transcription
  • 687DNA binding
  • 429DNA accessibility
  • 25DNA methylation
  • 163D chromatin structure
Target of assay
  • 554histone
  • 554histone modification
  • 296narrow histone mark
  • 258broad histone mark
  • 120control
  • 15transcription factor
  • 13RNA binding protein
  • 2nucleotide modification
Date released
  • 545February, 2021
  • 242October, 2019
  • 229August, 2021
  • 193May, 2020
  • 163June, 2019
  • 118July, 2018
  • 115May, 2019
  • 109August, 2017
  • 95February, 2023
  • 82November, 2017
  • 80April, 2019
  • 77July, 2019
  • 47September, 2023
  • 42May, 2022
  • 40March, 2020
  • 40May, 2021
  • 40May, 2024
  • 40November, 2019
  • 25February, 2020
  • 19April, 2020
  • 16October, 2018
  • 15May, 2023
  • 8January, 2021
  • 6October, 2017
  • 4March, 2019
  • 4November, 2020
  • 3December, 2019
  • 2January, 2018
  • 1August, 2022
Available data
  • 1907bam
  • 1772bigWig
  • 1076tsv
  • 984bed narrowPeak
  • 561bigBed narrowPeak
  • fastq
  • 238tagAlign
  • 213bed broadPeak
  • 205bed bed3+
  • 176bigBed broadPeak
  • 157txt
  • 64xls
  • 25bed bedMethyl
  • 25bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 2398Homo sapiens
Biosample type
  • 2400tissue
  • 679primary cell
  • 253in vitro differentiated cells
  • 235cell line
  • 6stem cell
Organ
  • 504connective tissue
  • 445adipose tissue
  • 313heart
  • 299kidney
  • 292pancreas
  • 278liver
  • 253brain
  • 158bone element
  • 133blood vessel
  • 133vasculature
  • 122limb
  • 80musculature of body
  • 73artery
  • 56eye
  • 43nerve
  • 20lung
  • 18ureter
  • 16skeleton
  • 15epithelium
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 2303AMP
  • 47KPMP
  • 31T1D
  • 19LungMap
Genome assembly (visualization)
  • 1579GRCh38
  • 1461hg19
Lab
  • 2074AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 28Kyle Gaulton, UCSD
  • 19Xin Sun, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 91inconsistent ontology term
  • 9audit script error
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

2400 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue38231
islet of Langerhans195434874314
liver167782011211
kidney49277564136111
bone element84
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