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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
888
total RNA-seq
260
ATAC-seq
257
ChIP-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
5
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1084
Transcription
470
DNA accessibility
257
DNA binding
38
DNA methylation
5
3D chromatin structure
Target of assay
601
histone modification
600
histone
broad histone mark
narrow histone mark
164
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
228
August, 2021
May, 2020
163
June, 2019
161
August, 2017
120
July, 2018
95
February, 2023
77
July, 2019
73
October, 2019
66
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
39
November, 2019
31
March, 2020
26
May, 2019
26
November, 2018
25
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
May, 2024
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1276
bam
1108
bigWig
933
tsv
465
bed narrowPeak
304
fastq
249
bigBed narrowPeak
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
29
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1970
Homo sapiens
Biosample type
1973
tissue
698
primary cell
621
cell line
279
in vitro differentiated cells
8
stem cell
Organ
514
connective tissue
456
adipose tissue
429
pancreas
278
kidney
215
heart
158
bone element
125
liver
81
brain
78
blood vessel
78
vasculature
73
limb
55
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1878
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1223
GRCh38
1164
hg19
Lab
1658
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
files.file_type!
hic
month_released!
May, 2020
target.investigated_as!
broad histone mark
narrow histone mark
BIOSAMPLE
ASSAY
1973 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
68
20
6
1
7
4
1
1
1
4
adipose tissue
382
3
1
3
1
kidney
49
75
7
64
13
6
1
1
liver
24
20
58
1
2
3
1
1
1
bone element
84
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