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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
93
single cell RNA-seq
39
ATAC-seq
27
DNase-seq
15
total RNA-seq
8
WGBS
4
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
127
DNA binding
109
Transcription
66
DNA accessibility
9
DNA methylation
Target of assay
99
histone
99
histone modification
57
broad histone mark
42
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
20
July, 2019
11
October, 2019
6
March, 2020
3
February, 2020
2
May, 2021
Available data
173
bed narrowPeak
157
bigWig
132
bam
112
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
hic
Organism
315
Homo sapiens
Biosample type
315
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
500
pancreas
488
adipose tissue
360
liver
310
heart
298
kidney
265
brain
158
bone element
132
blood vessel
132
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
315
AMP
Genome assembly (visualization)
191
GRCh38
110
hg19
Lab
275
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
files.file_type!
hic
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
315 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
3
4
1
1
left cardiac atrium
40
18
1
coronary artery
5
36
2
1
heart
14
1
18
4
1
1
heart right ventricle
13
17
1
1
2
1
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