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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
38
ATAC-seq
7
total RNA-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
pCHi-C
Assay category
55
DNA binding
43
DNA accessibility
13
Transcription
2
DNA methylation
Target of assay
54
histone
54
histone modification
36
broad histone mark
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
36
May, 2019
35
February, 2023
22
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
2
March, 2020
Available data
82
bed narrowPeak
69
bam
52
bigWig
44
bigBed narrowPeak
14
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
hic
Organism
114
Homo sapiens
Biosample type
114
tissue
66
cell line
27
primary cell
Organ
534
connective tissue
476
adipose tissue
470
pancreas
316
liver
288
kidney
272
heart
158
bone element
151
brain
114
blood vessel
114
vasculature
107
limb
71
musculature of body
67
artery
54
eye
35
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
114
AMP
Genome assembly (visualization)
87
GRCh38
51
hg19
Lab
114
AMP-T2D consortium
files.file_type!
hic
organ_slims!
thymus
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
WGBS
pCHi-C
tissue
coronary artery
3
36
1
2
tibial artery
19
1
1
2
aorta
9
1
4
2
1
ascending aorta
12
2
1
thoracic aorta
12
1
2
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