Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
748
total RNA-seq
632
ChIP-seq
198
ATAC-seq
174
single cell RNA-seq
171
DNase-seq
87
RNA microarray
24
pCHi-C
23
WGBS
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
936
Transcription
632
DNA binding
388
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
555
histone modification
554
histone
292
narrow histone mark
262
broad histone mark
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
227
August, 2021
212
October, 2019
170
May, 2020
159
June, 2019
117
August, 2017
92
May, 2019
77
February, 2023
71
July, 2019
70
November, 2017
66
April, 2019
47
September, 2023
42
May, 2022
40
May, 2024
36
December, 2017
31
March, 2020
24
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
15
October, 2017
6
January, 2019
5
October, 2018
3
December, 2018
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1399
bigWig
1332
bam
861
bed narrowPeak
801
tsv
499
bigBed narrowPeak
193
bed broadPeak
177
bed bed3+
172
tagAlign
170
bigBed broadPeak
151
txt
115
fastq
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2112
Homo sapiens
Biosample type
2114
tissue
719
primary cell
498
cell line
353
in vitro differentiated cells
9
stem cell
Organ
523
connective tissue
pancreas
464
adipose tissue
315
liver
297
heart
293
kidney
240
brain
158
bone element
117
blood vessel
117
vasculature
105
limb
78
musculature of body
66
artery
56
eye
32
nerve
20
lung
18
ureter
17
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2047
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1472
GRCh38
1341
hg19
Lab
1825
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
files.file_type!
ibed
organ_slims!
pancreas
target.investigated_as!
control
BIOSAMPLE
ASSAY
2114 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
1
3
1
3
liver
167
102
20
1
2
1
3
1
1
1
kidney
49
21
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
29
2
18
3
1
4
1
1
+ See 173 more…
See all biosamples
Download