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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
288
total RNA-seq
152
ChIP-seq
63
ATAC-seq
11
snATAC-seq
9
DNase-seq
6
single cell RNA-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
3
pCHi-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
Assay category
296
Transcription
152
DNA binding
85
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
control
40
narrow histone mark
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
51
October, 2018
45
October, 2019
39
November, 2019
38
May, 2021
24
May, 2022
18
February, 2023
10
March, 2020
8
January, 2021
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
2
August, 2021
2
February, 2020
2
May, 2019
1
August, 2022
Available data
471
bam
404
bigWig
281
tsv
213
fastq
150
bed narrowPeak
88
bigBed narrowPeak
29
bed bed3+
22
bed broadPeak
16
tagAlign
8
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
543
Homo sapiens
Biosample type
550
tissue
346
primary cell
92
cell line
3
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
519
AMP
31
T1D
Genome assembly (visualization)
444
hg19
417
GRCh38
Lab
486
AMP-T2D consortium
52
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
ibed
BIOSAMPLE
ASSAY
550 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
MeRIP-seq
WGBS
pCHi-C
FAIRE-seq
RRBS
small RNA-seq
tissue
islet of Langerhans
278
50
58
7
1
6
3
4
1
1
body of pancreas
3
35
4
4
2
2
tibial nerve
5
35
1
2
pancreas
2
16
4
2
1
2
1
1
1
endocrine pancreas
16
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