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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
85
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
85
DNA binding
25
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
39
transcription factor
26
histone modification
25
histone
20
control
14
broad histone mark
11
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
143
May, 2020
48
December, 2017
40
May, 2022
34
August, 2017
8
July, 2019
7
November, 2018
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
288
bam
265
bigWig
154
tsv
113
bed narrowPeak
83
fastq
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
291
Homo sapiens
Biosample type
384
cell line
291
tissue
15
in vitro differentiated cells
10
primary cell
Organ
538
connective tissue
489
pancreas
479
adipose tissue
313
heart
291
liver
285
kidney
158
bone element
147
brain
133
blood vessel
133
vasculature
122
limb
73
artery
67
musculature of body
56
eye
43
nerve
20
lung
18
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
291
AMP
Genome assembly (visualization)
241
hg19
219
GRCh38
Lab
251
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
files.file_type!
tagAlign
month_released!
January, 2019
May, 2023
BIOSAMPLE
ASSAY
291 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
75
20
2
3
1
1
1
1
1
right lobe of liver
3
10
1
2
1
2
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