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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
27
total RNA-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
85
DNA binding
31
Transcription
25
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
39
transcription factor
26
histone modification
25
histone
20
control
14
broad histone mark
11
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
May, 2020
48
December, 2017
40
May, 2022
34
August, 2017
8
July, 2019
7
November, 2018
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
95
bam
95
bigWig
86
bed narrowPeak
83
fastq
49
bigBed narrowPeak
tagAlign
11
tsv
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
148
Homo sapiens
Biosample type
388
cell line
148
tissue
15
in vitro differentiated cells
10
primary cell
Organ
539
connective tissue
489
pancreas
480
adipose tissue
313
heart
299
kidney
158
bone element
148
liver
147
brain
133
blood vessel
133
vasculature
122
limb
73
artery
67
musculature of body
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
148
AMP
Genome assembly (visualization)
98
hg19
76
GRCh38
Lab
108
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
files.file_type!
tagAlign
month_released!
May, 2020
BIOSAMPLE
ASSAY
148 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
75
24
20
2
3
1
1
1
1
1
right lobe of liver
10
3
1
2
1
2
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