Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1009
total RNA-seq
513
ChIP-seq
244
ATAC-seq
180
single cell RNA-seq
165
DNase-seq
87
RNA microarray
28
snATAC-seq
21
WGBS
20
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1205
Transcription
513
DNA binding
440
DNA accessibility
32
DNA methylation
15
3D chromatin structure
Target of assay
314
histone modification
313
histone
188
broad histone mark
125
narrow histone mark
114
control
87
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
225
August, 2017
October, 2019
163
June, 2019
143
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
November, 2018
25
February, 2020
19
April, 2020
16
November, 2017
15
May, 2023
9
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1695
bam
1589
bigWig
1067
tsv
816
bed narrowPeak
497
bigBed narrowPeak
351
fastq
200
bed broadPeak
192
bed bed3+
tagAlign
163
bigBed broadPeak
157
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2317
Homo sapiens
Biosample type
2319
tissue
953
primary cell
551
cell line
346
in vitro differentiated cells
10
stem cell
Organ
536
connective tissue
479
pancreas
478
adipose tissue
305
heart
295
kidney
278
liver
158
bone element
107
blood vessel
107
vasculature
97
brain
67
musculature of body
53
limb
47
artery
35
eye
20
lung
18
ureter
16
skeleton
16
spleen
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
2222
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1600
GRCh38
1510
hg19
Lab
1967
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
tagAlign
month_released!
November, 2018
October, 2019
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
2319 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
278
41
55
6
1
7
3
1
4
1
adipose tissue
382
2
2
3
1
liver
166
66
20
1
3
1
1
1
1
kidney
49
23
75
64
13
6
1
1
1
bone element
84
+ See 109 more…
See all biosamples
Download