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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1014
total RNA-seq
568
ChIP-seq
256
ATAC-seq
180
single cell RNA-seq
144
DNase-seq
87
RNA microarray
28
snATAC-seq
23
pCHi-C
21
WGBS
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1206
Transcription
568
DNA binding
430
DNA accessibility
31
DNA methylation
16
3D chromatin structure
Target of assay
357
histone modification
356
histone
202
broad histone mark
154
narrow histone mark
126
control
87
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
225
August, 2017
145
October, 2019
143
May, 2020
138
June, 2019
120
July, 2018
94
February, 2023
87
May, 2019
80
April, 2019
74
October, 2018
66
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
38
March, 2020
November, 2018
19
April, 2020
15
May, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1657
bam
1549
bigWig
1053
tsv
777
bed narrowPeak
430
bigBed narrowPeak
341
fastq
171
bed bed3+
170
bed broadPeak
157
txt
142
bigBed broadPeak
tagAlign
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
2366
Homo sapiens
Biosample type
2368
tissue
966
primary cell
581
cell line
354
in vitro differentiated cells
10
stem cell
Organ
538
connective tissue
482
pancreas
479
adipose tissue
313
heart
299
kidney
284
liver
158
bone element
brain
133
blood vessel
133
vasculature
122
limb
73
artery
67
musculature of body
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
16
spleen
15
epithelium
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2271
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1602
GRCh38
1535
hg19
Lab
2016
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
tagAlign
month_released!
November, 2018
organ_slims!
brain
BIOSAMPLE
ASSAY
2368 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
islet of Langerhans
292
62
67
6
1
7
4
3
1
4
1
adipose tissue
382
2
3
1
3
liver
167
71
20
1
1
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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