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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1026
total RNA-seq
627
ChIP-seq
259
ATAC-seq
179
single cell RNA-seq
146
DNase-seq
87
RNA microarray
27
snATAC-seq
26
WGBS
24
pCHi-C
15
small RNA-seq
10
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1220
Transcription
627
DNA binding
436
DNA accessibility
33
DNA methylation
10
3D chromatin structure
Target of assay
430
histone modification
429
histone
219
broad histone mark
210
narrow histone mark
133
control
94
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
212
August, 2017
193
October, 2019
143
May, 2020
131
June, 2019
120
July, 2018
104
May, 2019
95
February, 2023
76
April, 2019
70
July, 2019
64
May, 2022
63
October, 2018
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
35
March, 2020
35
May, 2024
26
November, 2018
23
February, 2020
19
April, 2020
16
November, 2017
15
May, 2023
9
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1840
bam
1688
bigWig
1069
tsv
907
bed narrowPeak
503
bigBed narrowPeak
360
fastq
tagAlign
170
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2442
Homo sapiens
Biosample type
2444
tissue
956
primary cell
526
cell line
343
in vitro differentiated cells
10
stem cell
Organ
534
connective tissue
481
pancreas
475
adipose tissue
303
heart
298
kidney
289
liver
158
bone element
147
brain
130
blood vessel
130
vasculature
122
limb
72
artery
musculature of body
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2347
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1674
GRCh38
1580
hg19
Lab
2097
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
21
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
tagAlign
organ_slims!
blood
musculature of body
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2444 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
60
68
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
74
20
1
2
3
1
1
1
1
kidney
49
26
75
64
13
6
1
1
1
bone element
84
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