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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
905
ChIP-seq
528
total RNA-seq
252
ATAC-seq
178
DNase-seq
166
single cell RNA-seq
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
905
DNA binding
710
Transcription
461
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
284
August, 2017
240
October, 2019
193
May, 2020
172
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
91
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
59
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1455
bam
1328
bigWig
976
bed narrowPeak
624
tsv
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
tagAlign bed3+
Organism
2153
Homo sapiens
Biosample type
2162
tissue
1040
primary cell
565
cell line
365
in vitro differentiated cells
10
stem cell
Organ
499
pancreas
360
liver
313
heart
264
brain
234
kidney
133
blood vessel
133
vasculature
116
limb
103
connective tissue
102
adipose tissue
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
5
gonad
5
ovary
4
bone element
4
skeleton
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2065
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1406
GRCh38
1301
hg19
Lab
1873
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tagAlign bed3+
txt
month_released!
February, 2021
organ_slims!
lymph node
BIOSAMPLE
ASSAY
2162 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
70
286
68
1
6
7
4
3
1
1
4
liver
145
167
20
2
3
1
1
1
1
kidney
27
75
13
51
6
1
1
1
heart left ventricle
35
3
2
3
18
4
1
1
1
left cardiac atrium
40
1
18
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