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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
748
total RNA-seq
676
ChIP-seq
198
ATAC-seq
174
single cell RNA-seq
171
DNase-seq
87
RNA microarray
24
pCHi-C
23
WGBS
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
936
Transcription
676
DNA binding
388
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
466
histone modification
465
histone
259
narrow histone mark
206
broad histone mark
137
control
73
transcription factor
16
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
238
October, 2019
227
August, 2021
193
May, 2020
159
June, 2019
137
August, 2017
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
71
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
31
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1365
bam
1307
bigWig
801
tsv
769
bed narrowPeak
407
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
164
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
tagAlign bed3+
Organism
2156
Homo sapiens
Biosample type
2158
tissue
737
primary cell
536
cell line
391
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
pancreas
488
adipose tissue
361
liver
299
kidney
292
heart
236
brain
158
bone element
115
limb
83
blood vessel
83
vasculature
75
musculature of body
68
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2091
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1381
GRCh38
1249
hg19
Lab
1869
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
files.file_type!
tagAlign bed3+
lab.title!
Bing Ren, UCSD
month_released!
May, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
2158 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
2
3
1
3
liver
167
145
20
1
2
1
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
1
4
1
1
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