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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1018
total RNA-seq
878
ChIP-seq
180
ATAC-seq
179
single cell RNA-seq
178
DNase-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1213
Transcription
878
DNA binding
388
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
627
histone modification
626
histone
323
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
282
August, 2017
240
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
111
May, 2019
February, 2023
82
November, 2017
77
July, 2019
76
April, 2019
66
May, 2022
63
October, 2018
47
September, 2023
46
December, 2017
40
March, 2020
40
May, 2021
40
November, 2019
35
May, 2024
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1884
bam
1745
bigWig
1072
tsv
895
bed narrowPeak
541
bigBed narrowPeak
362
fastq
238
tagAlign
213
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
153
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
tagAlign bed3+
Organism
2643
Homo sapiens
Biosample type
2652
tissue
990
primary cell
591
cell line
367
in vitro differentiated cells
10
stem cell
Organ
541
connective tissue
482
adipose tissue
479
pancreas
359
liver
298
kidney
267
heart
263
brain
150
bone element
122
limb
95
blood vessel
95
vasculature
82
musculature of body
43
nerve
37
artery
25
eye
25
spleen
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2573
AMP
47
KPMP
19
LungMap
13
T1D
Genome assembly (visualization)
1796
GRCh38
1699
hg19
Lab
2323
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tagAlign bed3+
month_released!
February, 2023
organ_slims!
skin of body
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2652 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
287
69
56
6
1
5
4
3
1
1
4
adipose tissue
382
2
2
3
1
liver
167
144
20
1
2
3
1
1
1
1
kidney
49
26
75
64
13
6
1
1
1
bone element
84
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