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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ATAC-seq
23
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
43
DNA accessibility
23
DNA binding
13
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
18
histone
18
histone modification
14
broad histone mark
5
control
4
narrow histone mark
Date released
May, 2019
35
February, 2023
26
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
61
bed narrowPeak
37
bam
31
bigWig
23
bigBed narrowPeak
14
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
83
Homo sapiens
Biosample type
83
tissue
66
cell line
37
primary cell
Organ
547
connective tissue
503
pancreas
488
adipose tissue
361
liver
299
kidney
292
heart
236
brain
158
bone element
115
limb
83
blood vessel
83
vasculature
75
musculature of body
68
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
83
AMP
Genome assembly (visualization)
66
GRCh38
31
hg19
Lab
83
AMP-T2D consortium
files.file_type!
tagAlign bed3+
month_released!
May, 2019
BIOSAMPLE
ASSAY
83 results
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ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
36
1
2
tibial artery
1
23
1
2
aorta
1
4
2
1
1
ascending aorta
2
1
thoracic aorta
1
2
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