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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
277
ChIP-seq
249
ATAC-seq
178
DNase-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
27
WGBS
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
459
DNA accessibility
277
DNA binding
177
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
616
histone modification
histone
322
narrow histone mark
293
broad histone mark
184
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
163
June, 2019
130
August, 2021
93
February, 2021
91
February, 2023
72
August, 2017
66
May, 2022
66
October, 2019
47
September, 2023
44
October, 2018
43
December, 2017
30
July, 2019
26
May, 2019
26
November, 2018
23
May, 2020
21
November, 2019
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
October, 2017
10
March, 2020
8
January, 2021
7
December, 2018
6
September, 2017
5
May, 2024
4
July, 2018
4
November, 2020
3
March, 2019
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
1
January, 2019
Available data
1432
bam
1243
bigWig
tsv
459
bed narrowPeak
293
fastq
249
bigBed narrowPeak
193
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
50
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1058
Homo sapiens
Biosample type
1061
tissue
581
primary cell
505
cell line
151
in vitro differentiated cells
4
stem cell
Organ
267
kidney
150
pancreas
138
liver
107
heart
100
bone element
66
limb
65
blood vessel
65
vasculature
56
adipose tissue
56
connective tissue
54
brain
50
musculature of body
49
artery
49
eye
19
lung
18
ureter
17
spleen
16
skeleton
14
nerve
12
epithelium
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
966
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
440
GRCh38
392
hg19
Lab
748
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
86
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
18
missing controlled_by
files.file_type!
tsv
lab.title!
Mark McCarthy, Oxford
month_released!
October, 2017
target.investigated_as!
histone
BIOSAMPLE
ASSAY
1061 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
7
75
13
49
59
6
1
1
1
islet of Langerhans
20
64
1
31
7
3
1
4
1
4
liver
81
20
2
20
1
3
1
1
bone element
84
coronary artery
3
36
2
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