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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
790
ChIP-seq
198
ATAC-seq
171
DNase-seq
88
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
23
WGBS
17
snATAC-seq
12
Hi-C
9
RRBS
5
pCHi-C
2
FAIRE-seq
Assay category
790
DNA binding
388
DNA accessibility
159
Transcription
32
DNA methylation
12
3D chromatin structure
Target of assay
555
histone modification
554
histone
292
narrow histone mark
262
broad histone mark
158
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
231
October, 2019
159
June, 2019
137
August, 2017
129
August, 2021
113
May, 2019
93
February, 2021
82
November, 2017
80
April, 2019
73
February, 2023
50
May, 2020
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
28
July, 2019
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
6
March, 2020
2
January, 2018
1
December, 2019
1
May, 2021
1
November, 2019
Available data
1478
bam
1399
bigWig
861
bed narrowPeak
tsv
499
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
164
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1469
Homo sapiens
Biosample type
1471
tissue
580
primary cell
485
cell line
260
in vitro differentiated cells
6
stem cell
Organ
287
kidney
242
brain
pancreas
207
liver
202
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1404
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
827
GRCh38
696
hg19
Lab
1182
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
88
inconsistent ontology term
27
inconsistent control
1
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
files.file_type!
tsv
lab.title!
Stephen Parker, UMich
organ_slims!
pancreas
BIOSAMPLE
ASSAY
1471 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
WGBS
snATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
kidney
27
75
13
49
59
6
1
1
1
liver
145
20
2
20
1
3
1
1
bone element
84
islet of Langerhans
21
10
14
4
heart left ventricle
35
2
3
4
1
1
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