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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
900
ChIP-seq
251
ATAC-seq
178
DNase-seq
106
total RNA-seq
61
single cell RNA-seq
27
WGBS
18
snATAC-seq
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
1
RNA microarray
Assay category
900
DNA binding
451
DNA accessibility
167
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
183
control
91
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
234
October, 2019
195
August, 2017
163
June, 2019
130
August, 2021
115
May, 2019
February, 2021
91
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
15
May, 2023
12
March, 2020
8
January, 2021
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1448
bam
1325
bigWig
973
bed narrowPeak
tsv
558
bigBed narrowPeak
370
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1574
Homo sapiens
Biosample type
1582
tissue
777
primary cell
497
cell line
259
in vitro differentiated cells
6
stem cell
Organ
287
kidney
242
brain
230
pancreas
206
liver
202
heart
119
blood vessel
119
vasculature
109
limb
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
18
ureter
17
spleen
12
epithelium
8
bone element
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1504
AMP
47
KPMP
31
T1D
Genome assembly (visualization)
931
GRCh38
826
hg19
Lab
1250
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
lab.title!
Xin Sun, UCSD
month_released!
December, 2018
February, 2021
BIOSAMPLE
ASSAY
1582 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
kidney
27
75
13
49
59
6
1
1
1
liver
145
20
2
20
3
1
1
islet of Langerhans
71
67
1
31
7
3
1
4
1
4
heart left ventricle
35
2
3
4
1
1
body of pancreas
35
4
4
2
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