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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
769
ChIP-seq
221
ATAC-seq
173
DNase-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
25
WGBS
15
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
769
DNA binding
426
DNA accessibility
177
Transcription
36
DNA methylation
15
3D chromatin structure
Target of assay
521
histone modification
520
histone
287
narrow histone mark
233
broad histone mark
160
control
90
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
208
October, 2019
195
August, 2017
160
June, 2019
130
August, 2021
93
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
May, 2019
56
February, 2023
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
26
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
15
May, 2023
11
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1755
bam
1648
bigWig
tsv
830
bed narrowPeak
445
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1508
Homo sapiens
Biosample type
1517
tissue
778
primary cell
529
cell line
263
in vitro differentiated cells
6
stem cell
Organ
287
kidney
228
pancreas
214
brain
207
liver
181
heart
108
limb
100
bone element
90
connective tissue
89
adipose tissue
69
blood vessel
vasculature
68
musculature of body
64
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1420
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
788
GRCh38
717
hg19
Lab
1166
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
month_released!
May, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
1517 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
27
75
13
49
59
6
1
1
1
liver
145
20
2
20
1
3
1
1
islet of Langerhans
71
67
1
31
7
3
1
4
1
4
bone element
84
heart left ventricle
35
2
3
4
1
1
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