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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
806
ChIP-seq
146
ATAC-seq
110
DNase-seq
85
RNA microarray
31
total RNA-seq
27
WGBS
21
snATAC-seq
15
Hi-C
11
single cell RNA-seq
10
RRBS
5
pCHi-C
4
MeRIP-seq
3
FAIRE-seq
Assay category
806
DNA binding
280
DNA accessibility
42
Transcription
37
DNA methylation
15
3D chromatin structure
Target of assay
578
histone modification
577
histone
303
narrow histone mark
274
broad histone mark
152
control
78
transcription factor
16
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
230
October, 2019
195
August, 2017
115
May, 2019
95
June, 2019
93
February, 2021
91
February, 2023
82
November, 2017
October, 2018
May, 2022
57
April, 2019
50
May, 2020
48
December, 2017
40
May, 2024
28
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
12
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
August, 2021
2
January, 2018
2
May, 2021
1
August, 2022
1
May, 2023
Available data
1711
bam
1616
bigWig
tsv
748
bed narrowPeak
429
bigBed narrowPeak
295
fastq
238
tagAlign
145
bed broadPeak
136
bed bed3+
108
bigBed broadPeak
88
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
1265
Homo sapiens
Biosample type
1274
tissue
654
primary cell
530
cell line
263
in vitro differentiated cells
6
stem cell
Organ
kidney
242
brain
202
heart
167
liver
155
pancreas
119
blood vessel
119
vasculature
115
limb
100
bone element
73
musculature of body
69
artery
67
connective tissue
66
adipose tissue
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1224
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
734
GRCh38
663
hg19
Lab
1176
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
1
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
month_released!
May, 2022
October, 2018
organ_slims!
kidney
BIOSAMPLE
ASSAY
1274 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
total RNA-seq
WGBS
snATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
71
49
1
25
7
3
1
4
4
1
liver
145
2
3
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
coronary artery
5
36
2
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