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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
905
ChIP-seq
221
ATAC-seq
178
DNase-seq
85
RNA microarray
80
total RNA-seq
70
single cell RNA-seq
27
WGBS
27
snATAC-seq
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
905
DNA binding
430
DNA accessibility
150
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
chromatin remodeller
2
nucleotide modification
Date released
234
October, 2019
195
August, 2017
163
June, 2019
130
August, 2021
115
May, 2019
93
February, 2021
91
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
May, 2022
50
May, 2020
47
September, 2023
46
December, 2017
40
May, 2024
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
15
May, 2023
12
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1881
bam
1750
bigWig
tsv
944
bed narrowPeak
559
bigBed narrowPeak
351
fastq
238
tagAlign
213
bed broadPeak
204
bed bed3+
176
bigBed broadPeak
150
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1624
Homo sapiens
Biosample type
1633
tissue
683
primary cell
513
cell line
260
in vitro differentiated cells
6
stem cell
Organ
287
kidney
242
brain
206
pancreas
202
heart
165
liver
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
73
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1536
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
940
GRCh38
796
hg19
Lab
1346
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
25
inconsistent control
1
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
month_released!
May, 2022
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
1633 results
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ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
27
75
13
49
59
6
1
1
1
islet of Langerhans
71
49
1
25
7
3
1
4
1
4
liver
143
2
1
3
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
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