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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
880
ChIP-seq
184
ATAC-seq
110
DNase-seq
85
RNA microarray
57
total RNA-seq
27
WGBS
22
snATAC-seq
15
Hi-C
12
single cell RNA-seq
10
RRBS
5
pCHi-C
4
MeRIP-seq
3
FAIRE-seq
Assay category
880
DNA binding
319
DNA accessibility
69
Transcription
37
DNA methylation
15
3D chromatin structure
Target of assay
608
histone modification
607
histone
314
narrow histone mark
293
broad histone mark
181
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
230
October, 2019
195
August, 2017
115
May, 2019
95
June, 2019
93
February, 2021
91
February, 2023
82
November, 2017
74
October, 2018
66
May, 2022
57
April, 2019
50
May, 2020
48
December, 2017
40
May, 2024
28
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
12
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
August, 2021
2
January, 2018
2
May, 2021
1
August, 2022
1
May, 2023
Available data
1809
bam
1681
bigWig
tsv
831
bed narrowPeak
474
bigBed narrowPeak
377
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
95
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
1405
Homo sapiens
Biosample type
1414
tissue
733
primary cell
469
cell line
263
in vitro differentiated cells
6
stem cell
Organ
kidney
242
brain
230
pancreas
207
liver
202
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1364
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
779
GRCh38
747
hg19
Lab
1252
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
month_released!
September, 2018
organ_slims!
blood
kidney
BIOSAMPLE
ASSAY
1414 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
total RNA-seq
WGBS
snATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
MeRIP-seq
FAIRE-seq
tissue
liver
145
20
2
20
3
1
1
1
islet of Langerhans
71
67
1
31
7
3
1
4
4
1
bone element
84
heart left ventricle
35
2
3
4
1
1
body of pancreas
35
4
4
2
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