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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
834
ChIP-seq
221
ATAC-seq
173
DNase-seq
106
total RNA-seq
85
RNA microarray
62
single cell RNA-seq
25
WGBS
18
snATAC-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
4
pCHi-C
Assay category
834
DNA binding
416
DNA accessibility
168
Transcription
36
DNA methylation
15
3D chromatin structure
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
208
October, 2019
195
August, 2017
160
June, 2019
130
August, 2021
93
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
65
May, 2019
56
February, 2023
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
26
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
15
May, 2023
11
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
1
August, 2022
1
December, 2019
1
May, 2021
Available data
1820
bam
1702
bigWig
tsv
884
bed narrowPeak
499
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1554
Homo sapiens
Biosample type
1562
tissue
789
primary cell
529
cell line
263
in vitro differentiated cells
6
stem cell
Organ
287
kidney
242
brain
230
pancreas
207
liver
202
heart
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
thymus
Project
1485
AMP
47
KPMP
30
T1D
Genome assembly (visualization)
841
GRCh38
771
hg19
Lab
1231
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
organ_slims!
blood vessel
lung
thymus
BIOSAMPLE
ASSAY
1562 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
WGBS
snATAC-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
pCHi-C
tissue
kidney
27
75
13
49
59
6
1
1
1
liver
145
20
2
20
1
3
1
1
islet of Langerhans
71
67
1
31
7
3
1
1
4
4
bone element
84
heart left ventricle
35
2
3
4
1
1
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