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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
752
ChIP-seq
225
ATAC-seq
174
DNase-seq
86
total RNA-seq
85
RNA microarray
70
single cell RNA-seq
28
snATAC-seq
23
WGBS
15
Hi-C
10
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
752
DNA binding
431
DNA accessibility
156
Transcription
33
DNA methylation
15
3D chromatin structure
Target of assay
558
histone
558
histone modification
280
narrow histone mark
278
broad histone mark
141
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
228
October, 2019
163
June, 2019
141
August, 2017
130
August, 2021
115
May, 2019
92
February, 2021
82
November, 2017
80
April, 2019
79
February, 2023
74
October, 2018
47
September, 2023
40
May, 2024
29
July, 2019
26
May, 2022
23
October, 2017
21
November, 2019
19
April, 2020
19
November, 2018
15
May, 2023
11
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1619
bam
1507
bigWig
tsv
859
bed narrowPeak
512
bigBed narrowPeak
294
fastq
210
bed broadPeak
199
bed bed3+
173
bigBed broadPeak
168
tagAlign
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
1472
Homo sapiens
Biosample type
1481
tissue
527
primary cell
241
in vitro differentiated cells
113
cell line
6
stem cell
Organ
287
kidney
242
brain
230
pancreas
liver
202
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
skin of body
1
thymus
Project
1384
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
856
GRCh38
709
hg19
Lab
1170
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
organ_slims!
epithelium
liver
skin of body
BIOSAMPLE
ASSAY
1481 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
27
75
13
49
59
6
1
1
1
islet of Langerhans
71
66
1
31
7
3
1
4
1
4
bone element
84
heart left ventricle
35
2
3
4
1
1
body of pancreas
35
4
4
2
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